Cohort description
Femoral plaque samples were collected during endarterectomy of the femoral artery bifurcation between October 2014 and January 2017 [4]. The severity of LEAD of the patients (N = 90) was determined by ankle brachial index (ABI), toe pressure (TP), Fontaine classification of LEAD symptoms, and urgency of the operation. Preoperative magnetic resonance angiography images were used to confirm the severity of the stenosis (Fig. 1).
We compared the area occupied by nodular calcification and sheet calcification in the plaque tissue to the clinical characteristics listed above. We analyzed endarterectomy samples, which fulfilled two criteria:1) more than 90% stenosis, including obstruction, was observed macroscopically, histologically and by magnetic resonance angiography, and 2) internal elastic lamina for vessel diameter measurement was identifiable in the plaques’ histological section indicating that the full diameter of the vessel was available for analysis.
Plaques were formalin-fixed, decalcified, and longitudinally sectioned into two halves. Sections were stained with Hematoxylin and eosin stain for histomorphometry analysis. Sample processing and laboratory analyses are described in detail elsewhere [4].
Deep learning algorithm training
Hematoxylin and eosin-stained slides of femoral plaques longitudinal sections were digitized with a whole-slide scanner (3D HISTECH Pannoramic 250 Flash III, 3DHistec, Budapest, Hungary) with 20 × objective and a pixel size of 0.23 µm. The slides were then uploaded to a cloud-based image deep learning platform (Aiforia Create, Aiforia Technologies Oy, Helsinki, Finland, https://www.aiforia.com/).
To quantify each of the calcification categories, two sequential algorithms were developed; the first algorithm, the plaque tissue algorithm, recognized and quantified the area of plaque tissue from slide background. The algorithm was set to region context size of 50 µM, the complexity level of Complex and the default specifications. Upon this algorithm, a second algorithm, the calcification algorithm, was built for quantification of the calcification categories, nodular calcification and sheet calcification. While developing the algorithms, accuracy was assessed through 1) Verification of each annotation and 2) Analysis of the untrained regions and whole section slides. Calcification algorithm was fine adjusted on the following parameters: iterations = 7000, field of view = 100 x, image augmentation range (-10 to 10), aspect ratio = 1, maximum sheer = 1, luminance range (-30 to 30), contrast range (-30 to 30), maximum white balance change = 10, and noise = 2. The algorithm quantified nodular calcification and sheet calcification as the area of every recognized structure of the category in mm2, the collective area of each category, and the area proportion of the calcification category to that of the plaque section tissue area (Fig. 1).
The maximum width of the vessel diameter in the most stenosed part was measured to assess the vascular remodeling in relation to the area proportion of nodular calcification and sheet calcification. This was done using the measurement tool in the Aiforia platform (supplementary figure S4).
Validation of the deep learning algorithm
To optimize the analysis, visual validation of the final algorithm analysis was conducted, whereafter, tiny lesions that were part of the continuum yet did not contribute to an actual nodule, were excluded. This was done after visually determining the cut-off size limit of the lesion per each slide.
In validation analysis, eight sections with highest amount of nodular calcification (> 35%) and eight sections with highest amount of sheet calcification (> 25%) were identified. Validation areas (approximately 500 µm × 1000 µm) containing both categories were selected in each section and selected for analysis by one investigator (IL). A validating investigator (MIM), unaware of the regions defined by the algorithm, defined independently regions of nodular calcification and sheet calcification within the validation areas. The data was analyzed by comparing the performance of the analysis algorithm to the allocation of calcification categories by the validator in the validation areas.
Data analysis
Area proportions of nodular calcification and sheet calcification in plaque tissue were analyzed in relation to patients’ continuous and categorized binomial variables. Continuous data analysis of the patients is presented as the mean (± standard deviation). Data were analyzed for normal distribution by Shapiro–Wilk test. Normally distributed data were analyzed by two-tailed t-test and Pearson correlation test, while non-normally distributed data were analyzed by Mann–Whitney U and Spearman rank analysis. Analysis of covariance assessed association of measured vessel diameter with area proportion of nodular calcification and sheet calcification along with other confounding factors; age, gender, body mass index (BMI), smoking, hypertension, glomerular filtration rate (GFR) and inflammatory state (high sensitivity C-reactive protein (hs-CRP)). Our data fit the assumption of logistic regression analysis for the association of area proportion of nodular calcification and sheet calcification with the clinical parameters of LEAD, adjusted by hypertension, diabetes and dyslipidemia. P value < 0.05 was considered statistically significant. Data were analyzed using SPSS 25 (Armonk, NY: IBM Corp).
The age was categorized by the median into patients older or younger than 70.5 years. BMI was categorized by the cutoff point of normal and overweight (25 kg/m2) into normal, and overweight or obese (combined). Laboratory measurements were categorized according to the standardized age/gender-relevant reference values that are adopted in the analyzing facility, Helsinki University Hospital Laboratory Services (HUSLAB). Hs-CRP was considered increased for females when levels exceeded 2.5 mg/L and for males when levels exceeded 3 mg/L. GFR was considered impaired if it was less than the following values measured in ml/min /1.73 m2: 77 for patients aged 50–59 years, 69 for patients aged 60–69 and 59 for patients aged 70 years and older. Leukocytosis was labelled for readings higher than 8.2 E9/L, while anemia was deduced from females’ hemoglobin readings < 117 g/L and from males’ readings < 134 g/L. The categorization of ABI and TP values were based on clinical guidelines recommendations [14]. ABI less than 0.4 and TP less than 30 mmHg were deemed as severe disease indicators. Fontaine class was categorized into two groups, patients with claudication were deemed to have mild symptoms and patients with rest pain, ischemic ulcer or gangrene were considered to have severe symptoms [4]. Surgical interventions were classified into elective operations, semi-urgent operations were determined if surgical intervention was required within 4 weeks of the clinical evaluation.