SNP | Genotype | Frequency | OR(95% CI) | p value | Best model (p value) | |
---|---|---|---|---|---|---|
Cases n(%) | Controls n(%) | |||||
rs10455872 | AA AG GG | 193 (57.96) 140 (42.04) 0 (0) | 468(98.53) 7(1.47) 0(0) | Reference 48.5(22.3–105) NA | – < 0.0001 NA | Co dominant (NA) |
rs6725887 | TT TC CC | 251 (72.54) 89 (25.72) 6 (1.73) | 455(95.99) 19(4.033) 0(0) | Reference 8.49(5.05–14.3) 23.5(1.32–419) | – < 0.0001 0.032 | Log-additive (5.21e−21) |
rs782590 | CC CT TT | 175 (50.72) 130 (37.68) 40 (11.59) | 292(61.99) 149(31.63) 30(6.37) | Reference 1.45(1.08–1.97) 2.22(1.34–3.70) | – 0.014 0.002 | Log-additive (0.0004323) |
rs173539 | CC CT TT | 226 (93.77) 12 (4.98) 3 (1.24) | 361(97.83) 8(2.17) 0(0) | Reference 2.40(0.96–5.95) 11.2(0.57–217) | – 0.060 0.111 | Log-additive (0.011648) |
rs9818870 | CC CT TT | 293 (85.17) 47 (13.66) 4 (1.16) | 381(80.04) 85(17.86) 10(2.10) | Reference 0.72(0.49–1.06) 0.52(0.16–1.67) | – 0.095 0.273 | Log-additive (0.2571) |